Rutinosidase – labyrinthine journey for x-ray structure

Petr Pachl1, Jana Kapešová2, Jiří Brynda1,3, Lada Biedermannová4, Helena Pelantová2, Pavla Bojarová2, Vladimír Křen2, Pavlína Řezáčová1,3, Michael Kotik2

1Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic

2Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic

3Institute of Molecular Genetics of the Czech Academy of Sciences, Prague, Czech Republic

4Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Vestec, Czech Republic

petr.pachl@uochb.cas.cz

Obtaining well diffracting crystals and solving protein structure can be tedious work and successful process may include various crystallization techniques and tricks. Here we present one didactic story of crystallization a-L-Rhamnosyl-b-D-glucosidase (Rutionsidase) from Aspergilus niger. During the crystallization process, we performed screening using vapour diffusion method, optimization by counter diffusion technique, and final crystals soaking of heavy atoms in micro batch experiments, which allowed structure solution by SIRAS. However, to repeat the crystal growth, we had to deglycosylate the enzyme and perform new screening followed by Matrix Microseed Screening. Moreover, as final reproducible procedure, for growing the protein crystals, we used under oil micro batch experiments. With this optimised method, we were able to grow crystal that diffracted up to 1.27 Å resolution and see structural details that shall be used in the future.