Structural basis for hijacking of the host ACBD3 protein by picornaviruses

Martin Klíma1,#, Vladimíra Horová1, Dominika Chalupská1, Bartosz Różycki2, Miroslav Smola1, Jana Humpolíčková1, Evžen Bouřa1

 1Institute of Org. Chemistry and Biochemistry, Czech Academy of Sciences, Prague, Czech Republic

 2Institute of Physics, Polish Academy of Sciences, Warsaw, Poland

# e-mail: martin.klima@uochb.cas.cz

Picornaviruses are small, positive-sense single-stranded RNA viruses including many important human pathogens as well as infecting a wide range of other mammals such as livestock. Within the host cell, these viruses replicate at specific replication sites called replication organelles. In order to remodel the host membranes and to create the replication organelles, these viruses hijack several host factors including the lipid kinase phosphatidyl-inositol 4-kinase beta (PI4KB, [1]) and the acyl-CoA-binding domain-containing protein-3 (ACBD3, [2]). Using X-ray crystallography, we solved the structures of the protein complexes formed by the non-structural 3A proteins from several picornavirus species and the appropriate interacting domain of ACBD3. We show that the viral 3A proteins act as molecular harnesses to enslave the ACBD3 protein leading to its stabilization at target membranes, which leads in turn to the recruitment and activation of the PI4KB kinase. Our structural analysis explains how these viral-host protein complexes assemble at the membrane and identifies new potential targets for antiviral therapies.

[1] Klima, M., Toth, D.J., Hexnerova, R., Baumlova, A., Chalupska, D., Tykvart, J., Rezabkova, L., Sengupta, N., Man, P., Dubankova, A., Humpolickova, J., Nencka, R., Veverka, V., Balla, T. and Boura, E., Scientific reports (2016). 6: 23641.

[2] Klima, M., Chalupska, D., Rozycki, B., Humpolickova, J., Rezabkova, L., Silhan, J., Baumlova, A., Dubankova, A. and Boura, E., Structure (2017). 25(2): 219-230.

The work was supported by the Czech Science Foundation (grant number 17-07058Y), Academy of Sciences of the Czech Republic (RVO: 61388963), and Ministry of Education, Youth and Sports of the Czech Republic (project InterBioMed - LO1302).

 

Figure 1

Molecular dynamics simulation-based model derived from our crystal structure of the ACBD3 GOLD domain (mostly in gold, membrane-binding site in green) in complex with the 3A protein from human aichivirus (mostly in red, myristoylated Gly1 residue according to elements) on the lipid bilayer.