Crystallization studies of novel haloalkane dehalogenase DgaA from Glacieocola agarylitica NO2

Ivana Berkova1, Tatyana Prudnikova1,2, Michal Kuty1,2, Radka Chaloupkova3, Jiri Damborsky3, Ivana Kuta Smatanova1,2

1University of South Bohemia in Ceske Budejovice, Faculty of Science, Branisovska 1760, 370 05 Ceske Budejovice

2Academy of Science of the Czech Republic, Center for Nanobiology and Structural Biology IMB, Zamek 136, 373 33 Nove Hrady

31Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625 00 Brno, Czech Republic

 

Haloalkane dehalogenases (HLDs) are microbial enzymes that have attracted significant interest because of their ability to catalyze the irreversible hydrolysis of a wide range of halogenated compounds. These enzymes can be used as potential applicants in industrial catalysis, in the bioremediation and the biosensing of environmental pollutants. Novel haloalkane dehalogenase DgaA (EC 3.8.1.5, HLDs) belonging to the superfamily of α/β hydrolases, was isolated from a psychrophilic and moderately halophilic organism, Glaciecola agarilytica NO2, that was found in marine sediment collected from the East Sea, Korea. The purified protein dialyzed against 50mM Tris HCl buffer (pH 7.5) overnight and stored at 193 K was used for crystallization experiments in the concentration of 13.6 mg ml-1. Screening for crystallization conditions has been performed by Oryx crystallization robot (Douglas Instruments, Ltd., UK) using sitting drop vapour diffusion method. Commercial crystallization screen Index HR2-144 (Hampton Research, USA) was used for screening of DgaA crystallization conditions. Futher optimization to find successful crystallization conditions will be starting point for further research focused on structure determination and and description of protein function.

 

The work was supported from GACR 17-24321S.