Aqueous
salt solution of organic solvents as a media for enzymatic reactions
Babak Minofar
Department of Structure and Function of Proteins, Institute of Systems Biology and Ecology, Academy of Sciences of the Czech Republic, and Institute of Physical Biology, University of South Bohemia, Zamek 136, 37333 Nove Hrady, Czech Republic
e-mail: minofar@nh.usbe.cas.cz
The effect of
some nonionizing, water-soluble organic
solvents on the enzyme activity was studied both by experiments and molecular
dynamics (MD)simulations. Also it has been shown that many mono or divalent cations and anions
can enhance the activity of enzymes in aqueous
solutions of organic solvents.1,2 Organic solvents can have different effect of the catalytic reaction
such as lowering the energy of activated complex or stabilization of enzyme in
solution. Also using solution of organic solvents can improve the solubility of
some reactant. For example in the case of haloalkane dihalogenase the mixture
of organic solvent with water can increase the solubility of haloalkanes which
have low solubility in water. In this work solvation and dynamics of some
organic solvents in water have been studied by means of molecular dynamics
(MD)simulations. Moreover the effect of mixture of some organic solvents such
as DMSO, isopropanol and formamide on structure and dynamics of enzymes have
been studied. Also it is found from MD data that in some cases solution of
organic solvents prevent aggregation of some organic compound such as
carotenoides in water.
1)
Klibanov AM (2001) Improving enzymes by using them in organic solvents. Nature
409,
241–245.
2)
Micaelo NM, Teixeira VH, Baptista AM & Soares CM (2005) Water dependent properties
of cutinase in nonaqueous solvents: a computational study of
enantioselectivity. Biophys J 89, 999–1008.