| AddOption(RefObjOpt *opt) | ObjCryst::RefinableObj | protected |
| AddPar(const RefinablePar &newRefPar) | ObjCryst::RefinableObj | |
| AddPar(RefinablePar *newRefPar) | ObjCryst::RefinableObj | |
| AddPar(RefinableObj &newRefParList, const bool copyParam=false) | ObjCryst::RefinableObj | |
| AddRestraint(Restraint *pNewRestraint) | ObjCryst::RefinableObj | |
| AddSubRefObj(RefinableObj &) | ObjCryst::RefinableObj | protected |
| BeginGlobalOptRandomMove() | ObjCryst::RefinableObj | |
| BeginOptimization(const bool allowApproximations=false, const bool enableRestraints=false) | ObjCryst::ScatteringData | virtual |
| CalcGeomStructFactor() const | ObjCryst::ScatteringData | protected |
| CalcGlobalTemperatureFactor() const | ObjCryst::ScatteringData | protected |
| CalcIcalc() const | ObjCryst::DiffractionDataSingleCrystal | private |
| CalcLuzzatiFactor() const | ObjCryst::ScatteringData | protected |
| CalcResonantScattFactor() const | ObjCryst::ScatteringData | protectedvirtual |
| CalcScattFactor() const | ObjCryst::ScatteringData | protected |
| CalcSinThetaLambda() const | ObjCryst::ScatteringData | protectedvirtual |
| CalcStructFactor() const | ObjCryst::ScatteringData | protected |
| CalcStructFactVariance() const | ObjCryst::ScatteringData | protected |
| CalcTemperatureFactor() const | ObjCryst::ScatteringData | protected |
| ClearParamSet(const unsigned long id) const | ObjCryst::RefinableObj | |
| CreateCopy() const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| CreateParamSet(const string name="") const | ObjCryst::RefinableObj | |
| DeRegisterClient(RefinableObj &) const | ObjCryst::RefinableObj | virtual |
| DiffractionDataSingleCrystal(const bool regist=true) | ObjCryst::DiffractionDataSingleCrystal | |
| DiffractionDataSingleCrystal(Crystal &cryst, const bool regist=true) | ObjCryst::DiffractionDataSingleCrystal | |
| DiffractionDataSingleCrystal(const DiffractionDataSingleCrystal &old) | ObjCryst::DiffractionDataSingleCrystal | |
| EliminateExtinctReflections() | ObjCryst::ScatteringData | protected |
| EndOptimization() | ObjCryst::ScatteringData | virtual |
| EraseAllParamSet() | ObjCryst::RefinableObj | |
| FindPar(const string &name) const | ObjCryst::RefinableObj | protected |
| FindPar(const REAL *) const | ObjCryst::RefinableObj | protected |
| FindParamSet(unsigned long id) const | ObjCryst::RefinableObj | protected |
| FitScaleFactorForR() const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| FitScaleFactorForRw() const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| FixAllPar() | ObjCryst::RefinableObj | |
| GenHKLFullSpace(const REAL maxTheta, const bool unique=false) | ObjCryst::ScatteringData | virtual |
| GenHKLFullSpace2(const REAL maxsithsl, const bool unique=false) | ObjCryst::ScatteringData | virtual |
| GetBestRFactor() const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| GetChi2() const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| GetClassName() const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| GetClientRegistry() const | ObjCryst::RefinableObj | virtual |
| GetClientRegistry() | ObjCryst::RefinableObj | virtual |
| GetClockMaster() const | ObjCryst::RefinableObj | |
| GetClockNbReflBelowMaxSinThetaOvLambda() const | ObjCryst::ScatteringData | |
| GetClockTheta() const | ObjCryst::ScatteringData | |
| GetCrystal() const | ObjCryst::ScatteringData | |
| GetCrystal() | ObjCryst::ScatteringData | |
| GetFhklCalcImag() const | ObjCryst::ScatteringData | |
| GetFhklCalcReal() const | ObjCryst::ScatteringData | |
| GetFhklCalcSq() const | ObjCryst::ScatteringData | |
| GetFhklObsSq() const | ObjCryst::ScatteringData | |
| GetGeneGroup(const RefinableObj &obj, CrystVector_uint &groupIndex, unsigned int &firstGroup) const | ObjCryst::RefinableObj | virtual |
| GetH() const | ObjCryst::ScatteringData | |
| GetH2Pi() const | ObjCryst::ScatteringData | |
| GetIcalc() const | ObjCryst::DiffractionDataSingleCrystal | |
| GetIobs() const | ObjCryst::DiffractionDataSingleCrystal | |
| GetK() const | ObjCryst::ScatteringData | |
| GetK2Pi() const | ObjCryst::ScatteringData | |
| GetL() const | ObjCryst::ScatteringData | |
| GetL2Pi() const | ObjCryst::ScatteringData | |
| GetLogLikelihood() const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| GetLSQCalc(const unsigned int) const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| GetLSQDeriv(const unsigned int, RefinablePar &) | ObjCryst::RefinableObj | virtual |
| GetLSQObs(const unsigned int) const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| GetLSQWeight(const unsigned int) const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| GetMaxSinThetaOvLambda() const | ObjCryst::ScatteringData | |
| GetName() const | ObjCryst::RefinableObj | virtual |
| GetNbLSQFunction() const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| GetNbOption() const | ObjCryst::RefinableObj | |
| GetNbPar() const | ObjCryst::RefinableObj | |
| GetNbParNotFixed() const | ObjCryst::RefinableObj | |
| GetNbRefl() const | ObjCryst::ScatteringData | |
| GetNbReflBelowMaxSinThetaOvLambda() const | ObjCryst::ScatteringData | virtual |
| GetOption(const unsigned int i) | ObjCryst::RefinableObj | |
| GetOption(const unsigned int i) const | ObjCryst::RefinableObj | |
| GetPar(const long i) | ObjCryst::RefinableObj | |
| GetPar(const long i) const | ObjCryst::RefinableObj | |
| GetPar(const string &name) | ObjCryst::RefinableObj | |
| GetPar(const string &name) const | ObjCryst::RefinableObj | |
| GetPar(const REAL *) | ObjCryst::RefinableObj | |
| GetPar(const REAL *) const | ObjCryst::RefinableObj | |
| GetParamSet(const unsigned long setId) const | ObjCryst::RefinableObj | |
| GetParamSet(const unsigned long setId) | ObjCryst::RefinableObj | |
| GetParamSet_ParNotFixedHumanValue(const unsigned long setId, const long parNumber) const | ObjCryst::RefinableObj | |
| GetParamSetName(const unsigned long setId) const | ObjCryst::RefinableObj | |
| GetParIndex(const string &name, const bool nothrow=false) const | ObjCryst::RefinableObj | |
| GetParIndex(const REAL *, const bool nothrow=false) const | ObjCryst::RefinableObj | |
| GetParNotFixed(const long i) | ObjCryst::RefinableObj | |
| GetParNotFixed(const long i) const | ObjCryst::RefinableObj | |
| GetR() const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| GetRadiation() const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| GetRadiation() (defined in ObjCryst::DiffractionDataSingleCrystal) | ObjCryst::DiffractionDataSingleCrystal | |
| GetRadiationType() const | ObjCryst::ScatteringData | |
| GetReflX() const | ObjCryst::ScatteringData | |
| GetReflY() const | ObjCryst::ScatteringData | |
| GetReflZ() const | ObjCryst::ScatteringData | |
| GetRefParListClock() const | ObjCryst::RefinableObj | |
| GetRestraintCost() const | ObjCryst::RefinableObj | virtual |
| GetRw() const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| GetScaleFactor() const | ObjCryst::DiffractionDataSingleCrystal | |
| GetScatteringFactor() const | ObjCryst::ScatteringData | |
| GetSigma() const | ObjCryst::DiffractionDataSingleCrystal | |
| GetSinThetaOverLambda() const | ObjCryst::ScatteringData | |
| GetSubObjRegistry() | ObjCryst::RefinableObj | |
| GetSubObjRegistry() const | ObjCryst::RefinableObj | |
| GetTheta() const | ObjCryst::ScatteringData | |
| GetWavelength() const | ObjCryst::ScatteringData | |
| GetWeight() const | ObjCryst::DiffractionDataSingleCrystal | |
| GlobalOptRandomMove(const REAL mutationAmplitude, const RefParType *type=gpRefParTypeObjCryst) | ObjCryst::DiffractionDataSingleCrystal | virtual |
| ImportHklIobs(const string &fileName, const long nbRefl, const int skipLines=0) | ObjCryst::DiffractionDataSingleCrystal | |
| ImportHklIobsGroup(const string &fileName, const unsigned int skipLines=0) | ObjCryst::DiffractionDataSingleCrystal | |
| ImportHklIobsSigma(const string &fileName, const long nbRefl, const int skipLines=0) | ObjCryst::DiffractionDataSingleCrystal | |
| ImportHklIobsSigmaJanaM91(const string &fileName) | ObjCryst::DiffractionDataSingleCrystal | |
| InitOptions() | ObjCryst::DiffractionDataSingleCrystal | private |
| InitRefParList() (defined in ObjCryst::DiffractionDataSingleCrystal) | ObjCryst::DiffractionDataSingleCrystal | privatevirtual |
| IsBeingRefined() const | ObjCryst::RefinableObj | |
| IsIgnoringImagScattFact() const | ObjCryst::ScatteringData | |
| mCalcIntensity | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mChi2 | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mClientObjRegistry | ObjCryst::RefinableObj | mutableprotected |
| mClockChi2 | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mClockFhklCalcVariance (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | mutableprotected |
| mClockFhklObsSq | ObjCryst::ScatteringData | protected |
| mClockGeomStructFact | ObjCryst::ScatteringData | mutableprotected |
| mClockGlobalBiso | ObjCryst::ScatteringData | protected |
| mClockGlobalTemperatureFact | ObjCryst::ScatteringData | mutableprotected |
| mClockHKL | ObjCryst::ScatteringData | protected |
| mClockIcalc | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mClockLuzzatiFactor (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | mutableprotected |
| mClockMaster | ObjCryst::RefinableObj | protected |
| mClockNbReflUsed | ObjCryst::ScatteringData | mutableprotected |
| mClockPrepareTwinningCorr | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mClockScaleFactor | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mClockScattFactor | ObjCryst::ScatteringData | mutableprotected |
| mClockScattFactorResonant | ObjCryst::ScatteringData | mutableprotected |
| mClockStructFactor | ObjCryst::ScatteringData | mutableprotected |
| mClockStructFactorSq | ObjCryst::ScatteringData | mutableprotected |
| mClockThermicFact | ObjCryst::ScatteringData | mutableprotected |
| mClockTheta | ObjCryst::ScatteringData | mutableprotected |
| mDeleteRefParInDestructor | ObjCryst::RefinableObj | protected |
| mExpectedIntensityFactor | ObjCryst::ScatteringData | protected |
| mFhklCalcImag (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | mutableprotected |
| mFhklCalcReal | ObjCryst::ScatteringData | mutableprotected |
| mFhklCalcSq | ObjCryst::ScatteringData | mutableprotected |
| mFhklCalcVariance | ObjCryst::ScatteringData | mutableprotected |
| mFhklObsSq | ObjCryst::ScatteringData | protected |
| mGlobalBiso | ObjCryst::ScatteringData | protected |
| mGlobalTemperatureFactor | ObjCryst::ScatteringData | mutableprotected |
| mGroupIcalc | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mGroupIndex | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mGroupIobs | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mGroupOption | ObjCryst::DiffractionDataSingleCrystal | private |
| mGroupSigma | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mGroupWeight | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mH | ObjCryst::ScatteringData | protected |
| mH2Pi | ObjCryst::ScatteringData | mutableprotected |
| mHasObservedData | ObjCryst::DiffractionDataSingleCrystal | private |
| mIgnoreImagScattFact | ObjCryst::ScatteringData | protected |
| mIntH | ObjCryst::ScatteringData | mutableprotected |
| mIntK (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | mutableprotected |
| mIntL (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | mutableprotected |
| mK (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | protected |
| mK2Pi (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | mutableprotected |
| mL (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | protected |
| mL2Pi (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | mutableprotected |
| mLSQDeriv | ObjCryst::RefinableObj | mutableprotected |
| mMaxSinThetaOvLambda | ObjCryst::ScatteringData | protected |
| mMultiplicity | ObjCryst::ScatteringData | protected |
| mName | ObjCryst::RefinableObj | protected |
| mNbGroup | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mNbGroupUsed | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mNbRefl | ObjCryst::ScatteringData | protected |
| mNbReflUsed | ObjCryst::ScatteringData | mutableprotected |
| mNbRefParNotFixed | ObjCryst::RefinableObj | mutableprotected |
| mObsIntensity | ObjCryst::DiffractionDataSingleCrystal | private |
| mObsSigma | ObjCryst::DiffractionDataSingleCrystal | private |
| mOptimizationDepth | ObjCryst::RefinableObj | protected |
| mOptionRegistry | ObjCryst::RefinableObj | protected |
| mpCrystal | ObjCryst::ScatteringData | protected |
| mRadiation (defined in ObjCryst::DiffractionDataSingleCrystal) | ObjCryst::DiffractionDataSingleCrystal | private |
| mRandomMoveIsDone | ObjCryst::RefinableObj | protected |
| mRefParListClock | ObjCryst::RefinableObj | protected |
| mRefparNotFixedIndex | ObjCryst::RefinableObj | mutableprotected |
| mScaleFactor | ObjCryst::DiffractionDataSingleCrystal | mutableprivate |
| mSinThetaLambda | ObjCryst::ScatteringData | mutableprotected |
| mSubObjRegistry | ObjCryst::RefinableObj | protected |
| mTheta | ObjCryst::ScatteringData | mutableprotected |
| mUseFastLessPreciseFunc | ObjCryst::ScatteringData | protected |
| mvFprime | ObjCryst::ScatteringData | mutableprotected |
| mvFsecond (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | mutableprotected |
| mvImagGeomSF (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | mutableprotected |
| mvLuzzatiFactor | ObjCryst::ScatteringData | mutableprotected |
| mvpRefPar | ObjCryst::RefinableObj | protected |
| mvpRestraint | ObjCryst::RefinableObj | protected |
| mvpSavedValuesSet | ObjCryst::RefinableObj | mutableprotected |
| mvRealGeomSF | ObjCryst::ScatteringData | mutableprotected |
| mvScatteringFactor | ObjCryst::ScatteringData | mutableprotected |
| mvTemperatureFactor | ObjCryst::ScatteringData | mutableprotected |
| mWeight | ObjCryst::DiffractionDataSingleCrystal | private |
| mX | ObjCryst::ScatteringData | mutableprotected |
| mY (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | mutableprotected |
| mZ (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | mutableprotected |
| operator=(const RefinableObj &old) | ObjCryst::RefinableObj | |
| Prepare() | ObjCryst::RefinableObj | protectedvirtual |
| PrepareForRefinement() const | ObjCryst::RefinableObj | |
| PrepareHKLarrays() | ObjCryst::ScatteringData | protectedvirtual |
| PrepareTwinningCalc() const | ObjCryst::DiffractionDataSingleCrystal | private |
| Print() const (defined in ObjCryst::RefinableObj) | ObjCryst::RefinableObj | virtual |
| PrintFhklCalc(ostream &os=cout) const | ObjCryst::ScatteringData | virtual |
| PrintFhklCalcDetail(ostream &os=cout) const | ObjCryst::ScatteringData | virtual |
| PrintObsCalcData() const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| PrintObsData() const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| RandomizeConfiguration() | ObjCryst::RefinableObj | virtual |
| RefinableObj() | ObjCryst::RefinableObj | |
| RefinableObj(const bool internalUseOnly) | ObjCryst::RefinableObj | |
| RefinableObj(const RefinableObj &old) | ObjCryst::RefinableObj | |
| RegisterClient(RefinableObj &) const | ObjCryst::RefinableObj | virtual |
| RemovePar(RefinablePar *refPar) | ObjCryst::RefinableObj | |
| RemoveRestraint(Restraint *pRestraint) | ObjCryst::RefinableObj | |
| RemoveSubRefObj(RefinableObj &) | ObjCryst::RefinableObj | protected |
| ResetParList() | ObjCryst::RefinableObj | |
| RestoreParamSet(const unsigned long id) | ObjCryst::RefinableObj | |
| SaveHKLIobsIcalc(const string &filename="hklIobsIcalc.out") | ObjCryst::DiffractionDataSingleCrystal | |
| SaveParamSet(const unsigned long id) const | ObjCryst::RefinableObj | |
| ScatteringData() (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | |
| ScatteringData(const ScatteringData &old) (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | |
| SetApproximationFlag(const bool allow) | ObjCryst::ScatteringData | virtual |
| SetCrystal(Crystal &crystal) | ObjCryst::ScatteringData | virtual |
| SetDeleteRefParInDestructor(const bool b) | ObjCryst::RefinableObj | |
| SetEnergy(const REAL) | ObjCryst::DiffractionDataSingleCrystal | |
| SetGlobalOptimStep(const RefParType *type, const REAL step) | ObjCryst::RefinableObj | |
| SetHKL(const CrystVector_REAL &h, const CrystVector_REAL &k, const CrystVector_REAL &l) | ObjCryst::ScatteringData | virtual |
| SetHklIobs(const CrystVector_long &h, const CrystVector_long &k, const CrystVector_long &l, const CrystVector_REAL &iObs, const CrystVector_REAL &sigma) | ObjCryst::DiffractionDataSingleCrystal | |
| SetIobs(const CrystVector_REAL &) | ObjCryst::DiffractionDataSingleCrystal | |
| SetIobsToIcalc() | ObjCryst::DiffractionDataSingleCrystal | |
| SetIsIgnoringImagScattFact(const bool b) | ObjCryst::ScatteringData | |
| SetLimitsAbsolute(const string &parName, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
| SetLimitsAbsolute(const RefParType *type, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
| SetLimitsProportional(const string &parName, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
| SetLimitsProportional(const RefParType *type, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
| SetLimitsRelative(const string &parName, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
| SetLimitsRelative(const RefParType *type, const REAL min, const REAL max) | ObjCryst::RefinableObj | |
| SetMaxSinThetaOvLambda(const REAL max) | ObjCryst::ScatteringData | virtual |
| SetName(const string &name) | ObjCryst::RefinableObj | virtual |
| SetParIsFixed(const long parIndex, const bool fix) | ObjCryst::RefinableObj | |
| SetParIsFixed(const string &parName, const bool fix) | ObjCryst::RefinableObj | |
| SetParIsFixed(const RefParType *type, const bool fix) | ObjCryst::RefinableObj | |
| SetParIsUsed(const string &parName, const bool use) | ObjCryst::RefinableObj | |
| SetParIsUsed(const RefParType *type, const bool use) | ObjCryst::RefinableObj | |
| SetRadiationType(const RadiationType radiation) | ObjCryst::DiffractionDataSingleCrystal | virtual |
| SetSigma(const CrystVector_REAL &) | ObjCryst::DiffractionDataSingleCrystal | |
| SetSigmaToSqrtIobs() | ObjCryst::DiffractionDataSingleCrystal | virtual |
| SetUseOnlyLowAngleData(const bool useOnlyLowAngle, const REAL angle=0.) (defined in ObjCryst::DiffractionDataSingleCrystal) | ObjCryst::DiffractionDataSingleCrystal | virtual |
| SetWavelength(const REAL) | ObjCryst::DiffractionDataSingleCrystal | |
| SetWavelength(const string &XRayTubeElementName, const REAL alpha2Alpha2ratio=0.5) | ObjCryst::DiffractionDataSingleCrystal | |
| SetWeight(const CrystVector_REAL &) | ObjCryst::DiffractionDataSingleCrystal | |
| SetWeightToInvSigma2(const REAL minRelatSigma=1e-4) | ObjCryst::DiffractionDataSingleCrystal | virtual |
| SortReflectionBySinThetaOverLambda(const REAL maxTheta=-1.) | ObjCryst::DiffractionDataSingleCrystal | privatevirtual |
| TagNewBestConfig() const | ObjCryst::RefinableObj | virtual |
| UnFixAllPar() | ObjCryst::RefinableObj | |
| UpdateDisplay() const | ObjCryst::RefinableObj | virtual |
| XMLInput(istream &is, const XMLCrystTag &tag) | ObjCryst::DiffractionDataSingleCrystal | virtual |
| XMLOutput(ostream &os, int indent=0) const | ObjCryst::DiffractionDataSingleCrystal | virtual |
| ~DiffractionDataSingleCrystal() (defined in ObjCryst::DiffractionDataSingleCrystal) | ObjCryst::DiffractionDataSingleCrystal | |
| ~RefinableObj() | ObjCryst::RefinableObj | virtual |
| ~ScatteringData() (defined in ObjCryst::ScatteringData) | ObjCryst::ScatteringData | |
